The section citations connect domain mechanisms, methods and cases to the underlying sources. Read each reference for its question, design, findings and limits. Technical guides, case investigations and scholarly articles do not provide interchangeable forms of evidence.
- S01 · Scholarly principles article
Wilkinson, M. D. et al. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data 3, 160018.
Original publication / source ↗Findability, accessibility, interoperability and reuse; FAIR does not imply unrestricted access.
- S02 · Scholarly perspective
Munafò, M. R. et al. (2017). A manifesto for reproducible science. Nature Human Behaviour 1, 0021.
Original publication / source ↗Research design, analysis, reporting and incentives across the evidence lifecycle.
- S03 · Scholarly methodological essay
Ioannidis, J. P. A. (2005). Why Most Published Research Findings Are False. PLOS Medicine 2, e124.
Original publication / source ↗A model of how bias, power and prior odds affect the credibility of findings; not an empirical failure percentage for all science.
- S04 · Scholarly policy article
Nosek, B. A. et al. (2015). Promoting an open research culture. Science 348, 1422–1425.
Original publication / source ↗Transparency and Openness Promotion guidelines for data, methods and reporting.
- S05 · Scholarly perspective
Peng, R. D. (2011). Reproducible Research in Computational Science. Science 334, 1226–1227.
Original publication / source ↗Computational reproducibility as a practicable minimum for examining claims.
- S06 · Scholarly methods guidance
Sandve, G. K.; Nekrutenko, A.; Taylor, J.; Hovig, E. (2013). Ten Simple Rules for Reproducible Computational Research. PLOS Computational Biology 9, e1003285.
Original publication / source ↗Practical preservation of code, inputs, intermediate results and computational context.
- S07 · Scholarly statistical statement
Wasserstein, R. L.; Lazar, N. A. (2016). The ASA Statement on p-Values: Context, Process, and Purpose. The American Statistician 70, 129–133.
Original publication / source ↗Interpret inferential results with design, uncertainty and substantive context.
- S08 · Scholarly research article
Simmons, J. P.; Nelson, L. D.; Simonsohn, U. (2011). False-Positive Psychology: Undisclosed Flexibility in Data Collection and Analysis Allows Presenting Anything as Significant. Psychological Science 22, 1359–1366.
Original publication / source ↗Analytical flexibility and selective reporting as mechanisms of false-positive inflation.
- S09 · Scholarly perspective
Nosek, B. A. et al. (2018). The preregistration revolution. PNAS 115, 2600–2606.
Original publication / source ↗Distinguishing confirmatory tests from exploratory analyses.
- S10 · Scholarly research article
Open Science Collaboration (2015). Estimating the reproducibility of psychological science. Science 349, aac4716.
Original publication / source ↗A large replication study; interpret its selection and success criteria before generalizing.
- S11 · Scholarly research article
Errington, T. M. et al. (2021). Investigating the replicability of preclinical cancer biology. eLife 10, e71601.
Original publication / source ↗Meta-analysis of selected replication experiments; detailed barriers to methods and materials are documented in the companion article, DOI 10.7554/eLife.67995.
- S12 · Scholarly research article
Abbott, B. P. et al. (2016). Observation of Gravitational Waves from a Binary Black Hole Merger. Physical Review Letters 116, 061102.
Original publication / source ↗Instrumental consistency, background assessment and independent detector evidence.
- S13 · Scholarly perspective
Stodden, V. et al. (2016). Enhancing reproducibility for computational methods. Science 354, 1240–1241.
Original publication / source ↗Publishing computational artifacts and practices for independently examining results.
- S14 · Consensus study
National Academies of Sciences, Engineering, and Medicine (2019). Reproducibility and Replicability in Science. National Academies Press.
Original publication / source ↗Terminology and recommendations across disciplines; context matters for replication.
- S15 · Technical recommendation
W3C; Moreau, L.; Missier, P., editors (2013). PROV-DM: The PROV Data Model. W3C Recommendation, 30 April 2013.
Original publication / source ↗Entities, activities and agents for interoperable provenance representation.
- S16 · Metrology guidance
JCGM (2008). Evaluation of measurement data — Supplement 1 to the GUM — Propagation of distributions using a Monte Carlo method. JCGM 101:2008.
Original publication / source ↗Propagation of input uncertainty through a specified measurement model.
- S17 · Official recommendation
UNESCO (2021). Recommendation on Open Science. UNESCO General Conference.
Original publication / source ↗Equitable access, responsible openness and knowledge-system participation.
- S18 · Official investigation
NASA Mars Climate Orbiter Mishap Investigation Board (1999). Mars Climate Orbiter Mishap Investigation Board — Phase I Report. NASA Lessons Learned 641.
Original publication / source ↗Interface and verification failures involving inconsistent units.
- S19 · Official investigation
Columbia Accident Investigation Board (2003). Columbia Accident Investigation Board Report, Volume I. NASA Technical Reports Server.
Original publication / source ↗Evidence interpretation, organizational conditions and management decision pathways.
- S20 · Retraction notice
Obokata, H. et al. (2014). Retraction Note: Stimulus-triggered fate conversion of somatic cells into pluripotency. Nature 511, 112.
Original publication / source ↗A retraction record, used as evidence about correction of the literature, not evidence for the withdrawn biological claim.
- S21 · Official investigation
U.S. EPA Office of Inspector General (2018). Management Weaknesses Delayed Response to Flint Water Crisis. Report 18-P-0221.
Original publication / source ↗How evidence availability, interpretation and institutional response can diverge.
- C01 · peer-reviewed
Rinaldi, S. M.; Peerenboom, J. P.; Kelly, T. K. (2001). Identifying, understanding, and analyzing critical infrastructure interdependencies. IEEE Control Systems Magazine, 21(6), 11–25.
Original publication / source ↗Distinguishes physical, cyber, geographic and logical dependencies; use the categories to formulate a case-specific dependency hypothesis.
- C02 · peer-reviewed
Pescaroli, G.; Alexander, D. (2018). Understanding Compound, Interconnected, Interacting, and Cascading Risks: A Holistic Framework. Risk Analysis, 38, 2245–2257.
Original publication / source ↗Provides distinctions for examining interacting risks and propagation; a plausible pathway still needs evidence in the case.
- C03 · peer-reviewed
Saltelli, A. et al. (2010). Variance based sensitivity analysis of model output. Design and estimator for the total sensitivity index. Computer Physics Communications, 181, 259–270.
Original publication / source ↗Methodological reference for sensitivity analysis; assumptions about independence and the model structure must accompany the chosen estimator.
- C06 · technical guide
JCGM (2008). Evaluation of measurement data — Supplement 1 to the GUM — Propagation of distributions using a Monte Carlo method. JCGM 101:2008.
Original publication / source ↗A methodological basis for propagating input distributions through a specified model, rather than treating simulated frequency as an observed event probability.
- C07 · peer-reviewed
Ostrom, E. (2009). A general framework for analyzing sustainability of social-ecological systems. Science, 325, 419–422.
Original publication / source ↗Supports a structured inquiry into actors, resources, institutions and interactions; institutional interpretation must be adapted to the system studied.
External sources are cited for research and learning. Their inclusion implies no partnership, certification or institutional endorsement.